STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB11Hypothetical virb11 protein; Part of the Type IV secretion system. Belongs to the GSP E family. (351 aa)    
Predicted Functional Partners:
virB10
Putative virb10 protein.
 
  
 0.996
virB9
Putative type iv secretion system protein virb9.
 
  
 0.996
virB8
Putative type iv secretion system protein virb8.
 
  
 0.996
virB1
Putative virb1 protein.
 
   
 0.992
virB4
Probable type iv secretion system protein virb4.
 
  
 0.986
virB3
Probable type iv secretion system protein virb3.
  
  
 0.965
VirB6
Putative virb6 protein.
  
  
 0.955
traH
Putative conjugal transfer protein.
 
  
 0.849
XALC_2330
Putative type iv secretory pathway, conjugal transfer protein.
 
   
 0.833
XALC_2379
Putative type iv secretory pathway, conjugal transfer protein.
 
   
 0.833
Your Current Organism:
Xanthomonas albilineans
NCBI taxonomy Id: 380358
Other names: X. albilineans GPE PC73, Xanthomonas albilineans GPE PC73, Xanthomonas albilineans str. GPE PC73, Xanthomonas albilineans strain GPE PC73
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.