node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AHA_0552 | AHA_0553 | AHA_0552 | AHA_0553 | Transport protein. | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | 0.719 |
AHA_0552 | rnb | AHA_0552 | AHA_0554 | Transport protein. | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.559 |
AHA_0553 | AHA_0552 | AHA_0553 | AHA_0552 | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | Transport protein. | 0.719 |
AHA_0553 | rnb | AHA_0553 | AHA_0554 | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.603 |
AHA_2864 | pnp | AHA_2864 | AHA_3299 | Conserved domain protein; Identified by match to protein family HMM PF00313. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.509 |
AHA_2864 | rnb | AHA_2864 | AHA_0554 | Conserved domain protein; Identified by match to protein family HMM PF00313. | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.531 |
AHA_2864 | rne | AHA_2864 | AHA_2239 | Conserved domain protein; Identified by match to protein family HMM PF00313. | Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.560 |
AHA_2864 | rph | AHA_2864 | AHA_4224 | Conserved domain protein; Identified by match to protein family HMM PF00313. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.427 |
cspD | pnp | AHA_1855 | AHA_3299 | Cold shock domain protein CspD; Identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.491 |
cspD | rnb | AHA_1855 | AHA_0554 | Cold shock domain protein CspD; Identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381. | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.531 |
cspD | rne | AHA_1855 | AHA_2239 | Cold shock domain protein CspD; Identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381. | Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.558 |
cspD | rph | AHA_1855 | AHA_4224 | Cold shock domain protein CspD; Identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.421 |
pnp | AHA_2864 | AHA_3299 | AHA_2864 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Conserved domain protein; Identified by match to protein family HMM PF00313. | 0.509 |
pnp | cspD | AHA_3299 | AHA_1855 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Cold shock domain protein CspD; Identified by match to protein family HMM PF00313; match to protein family HMM TIGR02381. | 0.491 |
pnp | rnb | AHA_3299 | AHA_0554 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | 0.542 |
pnp | rne | AHA_3299 | AHA_2239 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.906 |
pnp | rph | AHA_3299 | AHA_4224 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.684 |
rnb | AHA_0552 | AHA_0554 | AHA_0552 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Transport protein. | 0.559 |
rnb | AHA_0553 | AHA_0554 | AHA_0553 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. | 0.603 |
rnb | AHA_2864 | AHA_0554 | AHA_2864 | Exoribonuclease II; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. | Conserved domain protein; Identified by match to protein family HMM PF00313. | 0.531 |