STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtxDRTX toxin transporter; Identified by similarity to GB:AAD21060.1; match to protein family HMM PF00529; match to protein family HMM TIGR01843. (454 aa)    
Predicted Functional Partners:
rtxB
RTX toxin transporter; Identified by similarity to GB:AAD21059.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.
 
 0.998
AHA_1354
RTX toxin transporter; Identified by similarity to GB:AAF94603.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01846.
 
 0.989
AHA_2701
Toxin secretion ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 0.952
rtxC
Cytolysin-activating lysine-acyltransferase RtxC; Identified by similarity to SP:Q9X4W3; match to protein family HMM PF02794.
 
   
 0.923
AHA_2699
Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.
 
 
 0.880
macB1
Macrolide-specific ABC-type efflux carrier; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.763
macB2
Macrolide-specific ABC-type efflux carrier; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.763
AHA_3766
HAS ABC exporter outer membrane component; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 
 0.706
AHA_2697
Structural toxin protein RtxA; Identified by similarity to GB:CAH14915.1; match to protein family HMM PF00092; match to protein family HMM PF00353.
 
  
 0.678
AHA_1359
Structural toxin protein RtxA; Identified by similarity to GB:AAD21057.1; match to protein family HMM PF02018.
 
   
 0.638
Your Current Organism:
Aeromonas hydrophila
NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966
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