Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AHA_1406 | AHA_1407 | AHA_1406 | AHA_1407 | Conserved hypothetical protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.796 |
AHA_1406 | AHA_1409 | AHA_1406 | AHA_1409 | Conserved hypothetical protein. | Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. | 0.410 |
AHA_1406 | AHA_1410 | AHA_1406 | AHA_1410 | Conserved hypothetical protein. | Conserved domain protein. | 0.512 |
AHA_1406 | pdxH | AHA_1406 | AHA_1408 | Conserved hypothetical protein. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.460 |
AHA_1407 | AHA_1406 | AHA_1407 | AHA_1406 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein. | 0.796 |
AHA_1407 | AHA_1409 | AHA_1407 | AHA_1409 | Hypothetical protein; Identified by Glimmer2; putative. | Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. | 0.410 |
AHA_1407 | AHA_1410 | AHA_1407 | AHA_1410 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved domain protein. | 0.410 |
AHA_1407 | pdxH | AHA_1407 | AHA_1408 | Hypothetical protein; Identified by Glimmer2; putative. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.460 |
AHA_1409 | AHA_1406 | AHA_1409 | AHA_1406 | Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. | Conserved hypothetical protein. | 0.410 |
AHA_1409 | AHA_1407 | AHA_1409 | AHA_1407 | Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. | Hypothetical protein; Identified by Glimmer2; putative. | 0.410 |
AHA_1409 | AHA_1410 | AHA_1409 | AHA_1410 | Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. | Conserved domain protein. | 0.773 |
AHA_1409 | AHA_1411 | AHA_1409 | AHA_1411 | Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | 0.680 |
AHA_1409 | pdxH | AHA_1409 | AHA_1408 | Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.687 |
AHA_1410 | AHA_1406 | AHA_1410 | AHA_1406 | Conserved domain protein. | Conserved hypothetical protein. | 0.512 |
AHA_1410 | AHA_1407 | AHA_1410 | AHA_1407 | Conserved domain protein. | Hypothetical protein; Identified by Glimmer2; putative. | 0.410 |
AHA_1410 | AHA_1409 | AHA_1410 | AHA_1409 | Conserved domain protein. | Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. | 0.773 |
AHA_1410 | AHA_1411 | AHA_1410 | AHA_1411 | Conserved domain protein. | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | 0.675 |
AHA_1410 | pdxH | AHA_1410 | AHA_1408 | Conserved domain protein. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.675 |
AHA_1411 | AHA_1409 | AHA_1411 | AHA_1409 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Identified by match to protein family HMM PF00043; match to protein family HMM PF02798. | 0.680 |
AHA_1411 | AHA_1410 | AHA_1411 | AHA_1410 | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | Conserved domain protein. | 0.675 |
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