Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHA_2917 | cmk | AHA_2917 | AHA_1808 | Ribosomal large subunit pseudouridine synthase b; Belongs to the pseudouridine synthase RsuA family | Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; Belongs to the cytidylate kinase family. Type 1 subfamily | 0.616 |
| AHA_2917 | der | AHA_2917 | AHA_1763 | Ribosomal large subunit pseudouridine synthase b; Belongs to the pseudouridine synthase RsuA family | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | 0.884 |
| AHA_2917 | mraW | AHA_2917 | AHA_3892 | Ribosomal large subunit pseudouridine synthase b; Belongs to the pseudouridine synthase RsuA family | S-adenosyl-methyltransferase mraw; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA | 0.434 |
| AHA_2917 | rplA | AHA_2917 | AHA_4031 | Ribosomal large subunit pseudouridine synthase b; Belongs to the pseudouridine synthase RsuA family | Ribosomal protein l1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 0.613 |
| AHA_2917 | rplO | AHA_2917 | AHA_0328 | Ribosomal large subunit pseudouridine synthase b; Belongs to the pseudouridine synthase RsuA family | Ribosomal protein l15; Binds to the 23S rRNA | 0.528 |
| AHA_2917 | rplT | AHA_2917 | AHA_2324 | Ribosomal large subunit pseudouridine synthase b; Belongs to the pseudouridine synthase RsuA family | Ribosomal protein l20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit | 0.513 |
| AHA_2917 | truB | AHA_2917 | AHA_3301 | Ribosomal large subunit pseudouridine synthase b; Belongs to the pseudouridine synthase RsuA family | Trna pseudouridine synthase b; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs | 0.740 |
| cmk | AHA_2917 | AHA_1808 | AHA_2917 | Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; Belongs to the cytidylate kinase family. Type 1 subfamily | Ribosomal large subunit pseudouridine synthase b; Belongs to the pseudouridine synthase RsuA family | 0.616 |
| cmk | der | AHA_1808 | AHA_1763 | Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; Belongs to the cytidylate kinase family. Type 1 subfamily | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | 0.940 |
| cmk | truB | AHA_1808 | AHA_3301 | Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; Belongs to the cytidylate kinase family. Type 1 subfamily | Trna pseudouridine synthase b; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs | 0.631 |
| der | AHA_2917 | AHA_1763 | AHA_2917 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | Ribosomal large subunit pseudouridine synthase b; Belongs to the pseudouridine synthase RsuA family | 0.884 |
| der | cmk | AHA_1763 | AHA_1808 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | Cytidylate kinase; Identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; Belongs to the cytidylate kinase family. Type 1 subfamily | 0.940 |
| der | engB | AHA_1763 | AHA_0268 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | Gtp-binding protein yiha; Necessary for normal cell division and for the maintenance of normal septation | 0.787 |
| der | hisS | AHA_1763 | AHA_1760 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | Histidyl-trna synthetase; Histidine--tRNA ligase; Identified by match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442 | 0.801 |
| der | mraW | AHA_1763 | AHA_3892 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | S-adenosyl-methyltransferase mraw; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA | 0.784 |
| der | obg | AHA_1763 | AHA_0932 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | Gtp-binding protein obg/cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | 0.850 |
| der | rplA | AHA_1763 | AHA_4031 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | Ribosomal protein l1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 0.795 |
| der | rplO | AHA_1763 | AHA_0328 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | Ribosomal protein l15; Binds to the 23S rRNA | 0.852 |
| der | rplT | AHA_1763 | AHA_2324 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | Ribosomal protein l20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit | 0.860 |
| der | truB | AHA_1763 | AHA_3301 | Gtp-binding protein enga; GTPase that plays an essential role in the late steps of ribosome biogenesis | Trna pseudouridine synthase b; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs | 0.895 |
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