Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AHA_0463 | AHA_1275 | AHA_0463 | AHA_1275 | Hypothetical outer membrane protein; Identified by match to protein family HMM PF00267. | Protein YciN. | 0.597 |
AHA_0463 | AHA_1999 | AHA_0463 | AHA_1999 | Hypothetical outer membrane protein; Identified by match to protein family HMM PF00267. | Conserved hypothetical protein; Identified by match to protein family HMM PF06526. | 0.755 |
AHA_0463 | crl | AHA_0463 | AHA_3422 | Hypothetical outer membrane protein; Identified by match to protein family HMM PF00267. | Curlin genes transcriptional activatory protein; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | 0.766 |
AHA_0463 | lapA | AHA_0463 | AHA_1811 | Hypothetical outer membrane protein; Identified by match to protein family HMM PF00267. | Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. | 0.739 |
AHA_0463 | yihI | AHA_0463 | AHA_0270 | Hypothetical outer membrane protein; Identified by match to protein family HMM PF00267. | Protein of unknown function; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. | 0.511 |
AHA_0463 | zapC | AHA_0463 | AHA_2286 | Hypothetical outer membrane protein; Identified by match to protein family HMM PF00267. | Conserved hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ. | 0.733 |
AHA_0854 | AHA_1275 | AHA_0854 | AHA_1275 | Outer membrane porin protein; Identified by match to protein family HMM PF00267. | Protein YciN. | 0.703 |
AHA_0854 | AHA_1999 | AHA_0854 | AHA_1999 | Outer membrane porin protein; Identified by match to protein family HMM PF00267. | Conserved hypothetical protein; Identified by match to protein family HMM PF06526. | 0.713 |
AHA_0854 | crl | AHA_0854 | AHA_3422 | Outer membrane porin protein; Identified by match to protein family HMM PF00267. | Curlin genes transcriptional activatory protein; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | 0.755 |
AHA_0854 | lapA | AHA_0854 | AHA_1811 | Outer membrane porin protein; Identified by match to protein family HMM PF00267. | Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. | 0.741 |
AHA_0854 | yihI | AHA_0854 | AHA_0270 | Outer membrane porin protein; Identified by match to protein family HMM PF00267. | Protein of unknown function; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family. | 0.499 |
AHA_0854 | zapC | AHA_0854 | AHA_2286 | Outer membrane porin protein; Identified by match to protein family HMM PF00267. | Conserved hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ. | 0.743 |
AHA_1275 | AHA_0463 | AHA_1275 | AHA_0463 | Protein YciN. | Hypothetical outer membrane protein; Identified by match to protein family HMM PF00267. | 0.597 |
AHA_1275 | AHA_0854 | AHA_1275 | AHA_0854 | Protein YciN. | Outer membrane porin protein; Identified by match to protein family HMM PF00267. | 0.703 |
AHA_1275 | AHA_1999 | AHA_1275 | AHA_1999 | Protein YciN. | Conserved hypothetical protein; Identified by match to protein family HMM PF06526. | 0.773 |
AHA_1275 | crl | AHA_1275 | AHA_3422 | Protein YciN. | Curlin genes transcriptional activatory protein; Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32; Belongs to the Crl family. | 0.763 |
AHA_1275 | lapA | AHA_1275 | AHA_1811 | Protein YciN. | Conserved hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family. | 0.415 |
AHA_1275 | zapC | AHA_1275 | AHA_2286 | Protein YciN. | Conserved hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ. | 0.734 |
AHA_1999 | AHA_0463 | AHA_1999 | AHA_0463 | Conserved hypothetical protein; Identified by match to protein family HMM PF06526. | Hypothetical outer membrane protein; Identified by match to protein family HMM PF00267. | 0.755 |
AHA_1999 | AHA_0854 | AHA_1999 | AHA_0854 | Conserved hypothetical protein; Identified by match to protein family HMM PF06526. | Outer membrane porin protein; Identified by match to protein family HMM PF00267. | 0.713 |
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