Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AHA_0893 | AHA_2450 | YfbU domain protein; Identified by match to protein family HMM PF03887. | Integral membrane protein with TrkA domains; Identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625. | 0.509 |
AHA_0893 | AHA_3079 | YfbU domain protein; Identified by match to protein family HMM PF03887. | Inner membrane protein YeeA. | 0.522 |
AHA_2450 | AHA_0893 | Integral membrane protein with TrkA domains; Identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625. | YfbU domain protein; Identified by match to protein family HMM PF03887. | 0.509 |
AHA_2450 | AHA_2451 | Integral membrane protein with TrkA domains; Identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625. | Lytic transglycosylase, catalytic; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family. | 0.504 |
AHA_2450 | AHA_2766 | Integral membrane protein with TrkA domains; Identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625. | Outer membrane protein. | 0.407 |
AHA_2450 | AHA_3079 | Integral membrane protein with TrkA domains; Identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625. | Inner membrane protein YeeA. | 0.436 |
AHA_2451 | AHA_2450 | Lytic transglycosylase, catalytic; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family. | Integral membrane protein with TrkA domains; Identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625. | 0.504 |
AHA_2766 | AHA_2450 | Outer membrane protein. | Integral membrane protein with TrkA domains; Identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625. | 0.407 |
AHA_3079 | AHA_0893 | Inner membrane protein YeeA. | YfbU domain protein; Identified by match to protein family HMM PF03887. | 0.522 |
AHA_3079 | AHA_2450 | Inner membrane protein YeeA. | Integral membrane protein with TrkA domains; Identified by match to protein family HMM PF02080; match to protein family HMM PF06826; match to protein family HMM TIGR01625. | 0.436 |