STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimOMiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (401 aa)    
Predicted Functional Partners:
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
       0.782
argH
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: aae:aq_1372 argininosuccinate lyase.
  
    0.776
ACG56854.1
TIGRFAM: bifunctional phosphoglucose/phosphomannose isomerase; PFAM: sugar isomerase (SIS); KEGG: aae:aq_750 hypothetical protein.
       0.774
ACG56851.1
PFAM: cytochrome c assembly protein; KEGG: aae:aq_055 cytochrome c biogenesis protein.
       0.773
ACG56848.1
KEGG: aae:aq_1436 putative protein.
  
    0.686
ACG56849.1
Pilin; KEGG: aae:aq_1435 pilin.
  
    0.686
ACG56847.1
Hypothetical protein; KEGG: sml:Smlt1009 putative glycine-rich autotransporter protein.
       0.672
ACG56856.1
Peptidase M23; PFAM: Peptidoglycan-binding LysM; Peptidase M23; KEGG: aae:aq_652 lipoprotein.
       0.594
ACG58077.1
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs.
 
  
 0.578
ACG56855.1
PFAM: acylphosphatase; KEGG: sso:SSO0887 acylphosphatase.
       0.550
Your Current Organism:
Hydrogenobaculum sp. Y04AAS1
NCBI taxonomy Id: 380749
Other names: H. sp. Y04AAS1
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