Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
dacB | galM | H16_A0575 | H16_A2863 | D-Alanyl-D-alanine carboxypeptidase, S13 family. | Aldose 1-epimerase. | 0.585 |
galM | dacB | H16_A2863 | H16_A0575 | Aldose 1-epimerase. | D-Alanyl-D-alanine carboxypeptidase, S13 family. | 0.585 |
galM | glk | H16_A2863 | H16_B2564 | Aldose 1-epimerase. | Glucokinase; Belongs to the bacterial glucokinase family. | 0.936 |
galM | h16_A1551 | H16_A2863 | H16_A1551 | Aldose 1-epimerase. | Outer membrane protein (porin). | 0.535 |
galM | h16_B1079 | H16_A2863 | H16_B1079 | Aldose 1-epimerase. | Outer membrane protein V. | 0.536 |
galM | h16_B2051 | H16_A2863 | H16_B2051 | Aldose 1-epimerase. | Conserved hypothetical protein. | 0.531 |
galM | phaZ2 | H16_A2863 | H16_A2862 | Aldose 1-epimerase. | Intracellular poly(3-hydroxybutyrate) depolymerase. | 0.547 |
galM | prsA | H16_A2863 | H16_A0372 | Aldose 1-epimerase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.526 |
galM | tim | H16_A2863 | H16_A1047 | Aldose 1-epimerase. | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.532 |
galM | tktA | H16_A2863 | H16_A3147 | Aldose 1-epimerase. | Transketolase; Belongs to the transketolase family. | 0.519 |
galM | treA | H16_A2863 | H16_B2096 | Aldose 1-epimerase. | Neutral trehalase. | 0.522 |
glk | galM | H16_B2564 | H16_A2863 | Glucokinase; Belongs to the bacterial glucokinase family. | Aldose 1-epimerase. | 0.936 |
glk | tktA | H16_B2564 | H16_A3147 | Glucokinase; Belongs to the bacterial glucokinase family. | Transketolase; Belongs to the transketolase family. | 0.842 |
glk | treA | H16_B2564 | H16_B2096 | Glucokinase; Belongs to the bacterial glucokinase family. | Neutral trehalase. | 0.553 |
h16_A1551 | galM | H16_A1551 | H16_A2863 | Outer membrane protein (porin). | Aldose 1-epimerase. | 0.535 |
h16_A1551 | h16_B1079 | H16_A1551 | H16_B1079 | Outer membrane protein (porin). | Outer membrane protein V. | 0.483 |
h16_A1551 | h16_B2051 | H16_A1551 | H16_B2051 | Outer membrane protein (porin). | Conserved hypothetical protein. | 0.440 |
h16_B1079 | galM | H16_B1079 | H16_A2863 | Outer membrane protein V. | Aldose 1-epimerase. | 0.536 |
h16_B1079 | h16_A1551 | H16_B1079 | H16_A1551 | Outer membrane protein V. | Outer membrane protein (porin). | 0.483 |
h16_B1079 | h16_B2051 | H16_B1079 | H16_B2051 | Outer membrane protein V. | Conserved hypothetical protein. | 0.760 |
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