Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
flgC | h16_A3060 | H16_B0262 | H16_A3060 | Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family. | Conserved hypothetical protein; Belongs to the UPF0234 family. | 0.598 |
h16_A1200 | h16_A3060 | H16_A1200 | H16_A3060 | Predicted metal-dependent phosphoesterase (PHP family). | Conserved hypothetical protein; Belongs to the UPF0234 family. | 0.471 |
h16_A1433 | h16_A3060 | H16_A1433 | H16_A3060 | DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Conserved hypothetical protein; Belongs to the UPF0234 family. | 0.402 |
h16_A3060 | flgC | H16_A3060 | H16_B0262 | Conserved hypothetical protein; Belongs to the UPF0234 family. | Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family. | 0.598 |
h16_A3060 | h16_A1200 | H16_A3060 | H16_A1200 | Conserved hypothetical protein; Belongs to the UPF0234 family. | Predicted metal-dependent phosphoesterase (PHP family). | 0.471 |
h16_A3060 | h16_A1433 | H16_A3060 | H16_A1433 | Conserved hypothetical protein; Belongs to the UPF0234 family. | DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.402 |
h16_A3060 | metK1 | H16_A3060 | H16_A0230 | Conserved hypothetical protein; Belongs to the UPF0234 family. | S-Adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.483 |
h16_A3060 | murB | H16_A3060 | H16_A3061 | Conserved hypothetical protein; Belongs to the UPF0234 family. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.591 |
metK1 | h16_A3060 | H16_A0230 | H16_A3060 | S-Adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | Conserved hypothetical protein; Belongs to the UPF0234 family. | 0.483 |
metK1 | murB | H16_A0230 | H16_A3061 | S-Adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.411 |
murB | h16_A3060 | H16_A3061 | H16_A3060 | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | Conserved hypothetical protein; Belongs to the UPF0234 family. | 0.591 |
murB | metK1 | H16_A3061 | H16_A0230 | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | S-Adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.411 |