Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ccoG | ccoN | H16_A2315 | H16_A2319 | Polyferredoxin; 5 TMHs. | Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family. | 0.990 |
ccoG | ccoO | H16_A2315 | H16_A2318 | Polyferredoxin; 5 TMHs. | Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs. | 0.992 |
ccoG | ccoP | H16_A2315 | H16_A2316 | Polyferredoxin; 5 TMHs. | Cbb3-type cytochrome oxidase, diheme subunit IV; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.994 |
ccoG | hemN | H16_A2315 | H16_A3615 | Polyferredoxin; 5 TMHs. | Oxygen-independent coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX. | 0.897 |
ccoG | ompW1 | H16_A2315 | H16_A3670 | Polyferredoxin; 5 TMHs. | Porin, OmpW family. | 0.647 |
ccoG | ompW2 | H16_A2315 | H16_B0080 | Polyferredoxin; 5 TMHs. | Porin, OmpW family. | 0.726 |
ccoN | ccoG | H16_A2319 | H16_A2315 | Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family. | Polyferredoxin; 5 TMHs. | 0.990 |
ccoN | ccoO | H16_A2319 | H16_A2318 | Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family. | Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs. | 0.999 |
ccoN | ccoP | H16_A2319 | H16_A2316 | Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family. | Cbb3-type cytochrome oxidase, diheme subunit IV; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.999 |
ccoN | hemF | H16_A2319 | H16_A0914 | Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family. | Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.495 |
ccoN | hemN | H16_A2319 | H16_A3615 | Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family. | Oxygen-independent coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX. | 0.912 |
ccoN | ompW1 | H16_A2319 | H16_A3670 | Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family. | Porin, OmpW family. | 0.712 |
ccoN | ompW2 | H16_A2319 | H16_B0080 | Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family. | Porin, OmpW family. | 0.756 |
ccoO | ccoG | H16_A2318 | H16_A2315 | Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs. | Polyferredoxin; 5 TMHs. | 0.992 |
ccoO | ccoN | H16_A2318 | H16_A2319 | Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs. | Cbb3-type cytochrome oxidase, subunit I; 12 TMHs; Belongs to the heme-copper respiratory oxidase family. | 0.999 |
ccoO | ccoP | H16_A2318 | H16_A2316 | Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs. | Cbb3-type cytochrome oxidase, diheme subunit IV; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. | 0.999 |
ccoO | hemF | H16_A2318 | H16_A0914 | Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs. | Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.495 |
ccoO | hemN | H16_A2318 | H16_A3615 | Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs. | Oxygen-independent coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX. | 0.901 |
ccoO | ompW1 | H16_A2318 | H16_A3670 | Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs. | Porin, OmpW family. | 0.741 |
ccoO | ompW2 | H16_A2318 | H16_B0080 | Cbb3-type cytochrome oxidase, monoheme subunit II; 1 TMHs. | Porin, OmpW family. | 0.786 |
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