STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_B0840Ribulose-5-phosphate 4-epimerase or related epimerase/aldolase. (256 aa)    
Predicted Functional Partners:
serA5
D-3-Phosphoglycerate dehydrogenase.
  
  
 0.826
h16_B0839
Transcriptional regulator, CRP-family.
       0.556
citE1
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
   
    0.499
citE2
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
   
    0.499
citE3
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
   
    0.499
citE4
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
   
    0.499
cbbL2
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity); Belongs to the RuBisCO large chain family. Type I subfamily.
  
  
 0.498
h16_B2320
Cytochrome c2 precursor.
  
 
 0.446
h16_B1688
Pyoverdine biosynthesis regulatory gene.
     0.417
h16_A3548
Predicted HD phosphohydrolase.
 
     0.416
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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