STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_B1275Predicted membrane protein. (666 aa)    
Predicted Functional Partners:
h16_B1273
Multidrug resistance efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.947
h16_B1274
Conserved hypothetical protein.
 
   
 0.938
h16_B1465
Fusaric acid resistance efflux transporter,membrane fusion protein.
  
 0.836
h16_B1272
Outer membrane efflux protein.
 
  
 0.813
iscU
Iron sulfur cluster assembly protein (IscU); A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.606
sufU
Iron sulfur cluster assembly protein (SufU).
   
    0.606
h16_B2219
ABC-type transporter, periplasmic component.
 
     0.503
h16_B1276
Transcriptional regulator, LysR-family; Belongs to the LysR transcriptional regulatory family.
       0.488
racX
Aspartate racemase.
   
    0.445
h16_B1271
Hypothetical membrane associated protein.
       0.433
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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