STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
h16_B17503-Hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (299 aa)    
Predicted Functional Partners:
mmsA3
Methylmalonate-semialdehyde dehydrogenase.
 
 
 0.935
mmsA1
Methylmalonate-semialdehyde dehydrogenase.
 
 
 0.929
mmsA2
Methylmalonate-semialdehyde dehydrogenase.
 
 
 0.929
h16_B1751
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.907
aptA
Omega-amino acid-pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.900
h16_B1757
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
 0.861
h16_A2291
Probable enoyl-CoA hydratase.
  
 0.842
h16_A0172
Acyl-CoA dehydrogenase, short-chain specific.
  
 
 0.831
h16_B0752
Acyl-CoA dehydrogenase, short-chain specific.
  
 
 0.831
h16_B0850
Acyl-CoA dehydrogenase, short-chain specific.
  
 
 0.831
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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