STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaCD3-Oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase. (391 aa)    
Predicted Functional Partners:
pcaB1
3-Carboxy-cis,cis-muconate cyclo-isomerase.
 
 0.990
pcaB2
3-Carboxy-cis,cis-muconate cyclo-isomerase.
 
 0.968
catC3
Muconolactone delta-isomerase.
 
 
 0.951
catC2
Muconolactone delta-isomerase.
 
 
 0.949
pcaJ
3-Oxoadipate CoA-transferase subunit B.
  
 
 0.930
pcaI
3-Oxoadipate CoA-transferase subunit A.
  
 
 0.927
h16_A0147
Predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily).
 
 
0.921
h16_A0535
Putative carboxymuconolactone decarboxylase.
 
 
0.921
catD1
3-Oxoadipate enol-lactone hydrolase.
 
 
0.912
h16_B1443
Hypothetical protein.
  
 
 0.912
Your Current Organism:
Cupriavidus necator
NCBI taxonomy Id: 381666
Other names: Alcaligenes eutropha H16, C. necator H16, Cupriavidus necator ATCC 17699, Cupriavidus necator H16, Ralstonia eutropha ATCC 17699, Ralstonia eutropha H16, Ralstonia eutropha str. H16, Ralstonia eutropha strain H16, Wautersia eutropha H16
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