STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fnod_0999Response regulator receiver protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: bce:BC1006 sigma factor SigB regulation protein RsbU. (452 aa)    
Predicted Functional Partners:
Fnod_0238
PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: tma:TM1267 thiH protein, putative.
   
    0.999
Fnod_1277
KEGG: tdn:Tmden_0219 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
  
 0.999
Fnod_1231
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tpt:Tpet_1352 anti-sigma-factor antagonist.
 
 
 0.998
Fnod_0792
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: gur:Gura_2044 anti-sigma-factor antagonist.
 
 
 0.997
Fnod_0219
TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-4 domain protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_1960 diguanylate cyclase with PAS/PAC sensor.
 
 
 0.996
Fnod_0791
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: tma:TM1081 anti-sigma factor antagonist, putative; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.995
Fnod_0833
PFAM: flagellar motor switch protein FliG; KEGG: tpt:Tpet_0704 flagellar motor switch protein FliG.
  
    0.993
Fnod_1714
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.993
Fnod_1651
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tpt:Tpet_0841 flagellar hook-associated protein FlgK; Belongs to the flagella basal body rod proteins family.
   
    0.984
Fnod_0844
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.979
Your Current Organism:
Fervidobacterium nodosum
NCBI taxonomy Id: 381764
Other names: F. nodosum Rt17-B1, Fervidobacterium nodosum Rt17-B1, Fervidobacterium nodosum str. Rt17-B1, Fervidobacterium nodosum strain Rt17-B1
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