STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101515691DEAD-box ATP-dependent RNA helicase 42. (1140 aa)    
Predicted Functional Partners:
LOC101490836
Splicing factor 3B subunit 1.
   
 0.992
LOC101506103
Splicing factor SF3a60 homolog.
   
 0.991
LOC101503741
PHD finger-like domain-containing protein 5B.
    
 0.989
LOC101494955
Splicing factor 3A subunit 2.
    
 0.989
LOC101489488
Small nuclear ribonucleoprotein-associated protein.
    
 0.987
LOC101501324
U2 small nuclear ribonucleoprotein A.
    
 0.984
LOC101509392
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.984
LOC101515130
Small nuclear ribonucleoprotein Sm D2.
   
 0.979
LOC101509637
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
    
 0.977
LOC101506549
pre-mRNA-processing protein 40C isoform X1.
   
 0.974
Your Current Organism:
Cicer arietinum
NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo
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