STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101498647Probable serine/threonine-protein kinase At1g54610. (544 aa)    
Predicted Functional Partners:
LOC101510875
Cyclin-dependent kinase D-3-like; Belongs to the protein kinase superfamily.
  
 
0.614
LOC101499259
cyclin-T1-4-like isoform X1; Belongs to the cyclin family.
    
 0.570
LOC101509753
cyclin-T1-3-like isoform X1; Belongs to the cyclin family.
    
 0.570
LOC101507367
cyclin-T1-3-like isoform X1; Belongs to the cyclin family.
    
 0.570
LOC101491717
cyclin-T1-3-like isoform X1; Belongs to the cyclin family.
    
 0.570
LOC101489315
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.551
LOC101498093
DNA-directed RNA polymerases II, IV and V subunit 3-like.
   
 
 0.534
LOC101489759
FACT complex subunit SPT16.
    
 0.508
LOC101494253
DNA-directed RNA polymerases II, IV and V subunit 6A-like.
   
 
 0.457
LOC101509290
Protein RNA-directed DNA methylation 3.
    
 0.452
Your Current Organism:
Cicer arietinum
NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo
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