STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101490323Transcription factor bHLH130-like isoform X1. (416 aa)    
Predicted Functional Partners:
LOC101502894
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
  
 0.968
LOC101509283
General transcription and DNA repair factor IIH subunit TFB1-1-like.
   
 0.965
LOC101515105
General transcription and DNA repair factor IIH helicase subunit XPD.
   
 0.964
LOC101499964
General transcription factor IIH subunit.
    
 0.963
LOC101507007
Transcription initiation factor IIE subunit alpha-like.
   
 0.963
LOC101493530
General transcription and DNA repair factor IIH subunit TFB4 isoform X1.
    
 0.963
LOC101500813
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.960
LOC101492244
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.935
LOC101510875
Cyclin-dependent kinase D-3-like; Belongs to the protein kinase superfamily.
    
 0.934
LOC101510430
DNA-directed RNA polymerase II subunit 4 isoform X1.
    
 0.921
Your Current Organism:
Cicer arietinum
NCBI taxonomy Id: 3827
Other names: C. arietinum, Cicer arietinum L., chickpea, garbanzo
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