arcA protein (Streptomyces pristinaespiralis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

arcA

Arginine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (409 aa)

Predicted Functional Partners:

SPRI_1841

0.999

argH

0.919

argG

0.918

SPRI_3642

0.911

SPRI_0359

0.842

SPRI_2466

0.806

SPRI_1844

0.746

SPRI_5310

0.693

SPRI_1290

0.657

SPRI_2337

0.643

Your Current Organism:

Streptomyces pristinaespiralis

NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPRI_0359	SPRI_2337	SPRI_0359	SPRI_2337	Ornithine decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Agmatine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the agmatine deiminase family.	0.927
SPRI_0359	arcA	SPRI_0359	SPRI_1842	Ornithine decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Arginine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.842
SPRI_0359	argH	SPRI_0359	SPRI_5990	Ornithine decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Argininosuccinate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.828
SPRI_1290	SPRI_1841	SPRI_1290	SPRI_1841	Integral membrane transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.445
SPRI_1290	arcA	SPRI_1290	SPRI_1842	Integral membrane transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Arginine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.657
SPRI_1841	SPRI_1290	SPRI_1841	SPRI_1290	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Integral membrane transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.445
SPRI_1841	SPRI_1844	SPRI_1841	SPRI_1844	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.488
SPRI_1841	SPRI_2466	SPRI_1841	SPRI_2466	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	0.486
SPRI_1841	SPRI_3642	SPRI_1841	SPRI_3642	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Acetyl-lysine deacetylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.917
SPRI_1841	arcA	SPRI_1841	SPRI_1842	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Arginine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.999
SPRI_1841	argG	SPRI_1841	SPRI_5989	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Argininosuccinate synthase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.995
SPRI_1841	argH	SPRI_1841	SPRI_5990	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Argininosuccinate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.931
SPRI_1844	SPRI_1841	SPRI_1844	SPRI_1841	Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.488
SPRI_1844	arcA	SPRI_1844	SPRI_1842	Hypothetical protein; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Arginine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.746
SPRI_2337	SPRI_0359	SPRI_2337	SPRI_0359	Agmatine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the agmatine deiminase family.	Ornithine decarboxylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.927
SPRI_2337	arcA	SPRI_2337	SPRI_1842	Agmatine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology; Belongs to the agmatine deiminase family.	Arginine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.643
SPRI_2466	SPRI_1841	SPRI_2466	SPRI_1841	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.486
SPRI_2466	arcA	SPRI_2466	SPRI_1842	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	Arginine deiminase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.806
SPRI_2466	argH	SPRI_2466	SPRI_5990	Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.	Argininosuccinate lyase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	0.471
SPRI_3642	SPRI_1841	SPRI_3642	SPRI_1841	Acetyl-lysine deacetylase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.917