STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPRI_2477methylmalonyl-CoA mutase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology. (566 aa)    
Predicted Functional Partners:
SPRI_2494
Transporter; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
  
 0.989
SPRI_6908
methylmalonyl-CoA mutase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 
0.982
SPRI_2496
methylmalonyl-CoA epimerase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.976
SPRI_3090
methylmalonyl-CoA mutase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.955
SPRI_0390
methylmalonyl-CoA mutase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
 0.946
SPRI_5055
acyl-CoA synthetase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
     
 0.900
SPRI_3244
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
    
 0.867
SPRI_6906
Membrane ATPase/protein kinase; Derived by Prodigal V2.6.2 analysis using gene prediction method: Protein Homology.
 
  
 0.855
SPRI_1970
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
    
 0.823
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
    
 0.818
Your Current Organism:
Streptomyces pristinaespiralis
NCBI taxonomy Id: 38300
Other names: S. pristinaespiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.