STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0219PFAM: NUDIX hydrolase; KEGG: rrs:RoseRS_0682 NUDIX hydrolase; Belongs to the Nudix hydrolase family. (158 aa)    
Predicted Functional Partners:
Rcas_0218
PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_0683 glycosyl transferase, group 1.
  
    0.777
Rcas_1496
PFAM: NUDIX hydrolase; KEGG: rrs:RoseRS_3464 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
  
     0.602
Rcas_0221
PFAM: metallophosphoesterase; KEGG: rrs:RoseRS_0680 metallophosphoesterase.
       0.555
Rcas_1643
TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rrs:RoseRS_1310 HAD-superfamily hydrolase, subfamily IIA; Belongs to the HAD-like hydrolase superfamily.
      0.553
Rcas_0220
KEGG: rrs:RoseRS_0681 hypothetical protein.
       0.537
Rcas_0222
KEGG: rrs:RoseRS_0679 hypothetical protein.
       0.537
Rcas_0223
FHA domain containing protein; PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; Forkhead-associated protein; KEGG: rrs:RoseRS_0678 peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
       0.537
Rcas_1837
TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rrs:RoseRS_2752 phosphoglycolate phosphatase; Belongs to the HAD-like hydrolase superfamily.
      0.477
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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