STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0276KEGG: gme:Gmet_0588 TPR repeat protein. (531 aa)    
Predicted Functional Partners:
Rcas_0275
KEGG: rrs:RoseRS_0262 hypothetical protein.
       0.773
Rcas_2690
PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_2641 lytic transglycosylase, catalytic.
  
  
 0.479
Rcas_1834
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_2749 tetratricopeptide TPR_2 repeat protein.
 
 
 0.462
Rcas_1359
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_4168 tetratricopeptide TPR_2 repeat protein.
 
   0.451
Rcas_1124
KEGG: rrs:RoseRS_3760 hypothetical protein.
 
 
   0.431
Rcas_0215
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: RNA-processing protein HAT helix repeating-containing protein; PBS lyase HEAT domain protein repeat-containing protein; Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0687 tetratricopeptide TPR_2 repeat protein.
 
 
 0.423
Rcas_3610
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_3936 hypothetical protein.
  
  
 0.422
Rcas_2321
FHA domain containing protein; PFAM: Forkhead-associated protein; KEGG: rrs:RoseRS_1696 FHA domain containing protein.
  
 
 0.408
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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