STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_0979Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rrs:RoseRS_0434 carbamoyl-phosphate synthase L chain, ATP-binding. (659 aa)    
Predicted Functional Partners:
Rcas_0950
PFAM: carboxyl transferase; KEGG: rrs:RoseRS_3695 carboxyl transferase.
 
 0.981
Rcas_4102
PFAM: carboxyl transferase; KEGG: rrs:RoseRS_3291 carboxyl transferase.
 
 0.981
Rcas_2881
PFAM: carboxyl transferase; KEGG: rrs:RoseRS_2907 propionyl-CoA carboxylase.
 
 0.979
Rcas_0975
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: rrs:RoseRS_3827 propionyl-CoA carboxylase.
 
 0.976
Rcas_0952
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: rrs:RoseRS_3693 biotin/lipoyl attachment domain-containing protein.
 
 
 0.969
Rcas_2954
PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; KEGG: cph:Cpha266_1063 biotin/lipoyl attachment domain-containing protein.
 
 0.958
Rcas_0977
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rrs:RoseRS_3825 enoyl-CoA hydratase/isomerase.
 
 0.927
Rcas_1888
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rrs:RoseRS_2971 acyl-CoA dehydrogenase domain protein.
  
 0.919
Rcas_1889
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rrs:RoseRS_2972 acyl-CoA dehydrogenase domain protein.
  
 0.919
Rcas_4173
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rrs:RoseRS_4311 acyl-CoA dehydrogenase domain protein.
  
 0.919
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
Server load: low (24%) [HD]