STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1467KEGG: rrs:RoseRS_4144 hypothetical protein. (414 aa)    
Predicted Functional Partners:
Rcas_1463
KEGG: rrs:RoseRS_4140 Fe-S-cluster-containing hydrogenase components 1-like protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.999
Rcas_1464
PFAM: Polysulphide reductase NrfD; KEGG: rrs:RoseRS_4141 polysulphide reductase, NrfD.
 
 
 0.998
Rcas_1465
KEGG: rrs:RoseRS_4142 hypothetical protein.
 
 
 0.995
Rcas_1462
KEGG: rrs:RoseRS_4139 hypothetical protein.
 
 
 0.993
Rcas_1466
KEGG: rrs:RoseRS_4143 hypothetical protein.
 
 
 0.988
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
   
 0.986
rpmJ
PFAM: ribosomal protein L36; KEGG: rrs:RoseRS_1162 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 0.974
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 0.974
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
 0.974
rplV
Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
  
 0.974
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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