STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_1853KEGG: rrs:RoseRS_2563 hypothetical protein. (864 aa)    
Predicted Functional Partners:
Rcas_1869
SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_2600 protein kinase.
 
 
 0.842
Rcas_0577
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_3845 protein kinase.
  
 
 0.830
Rcas_2809
Serine/threonine protein kinase with FHA domain; PFAM: Forkhead-associated protein; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_1671 protein kinase.
  
 
 0.830
Rcas_3040
PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: rrs:RoseRS_2631 protein kinase.
  
 
 0.830
Rcas_3381
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rrs:RoseRS_2229 protein kinase.
  
 
 0.830
Rcas_3987
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_3; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_1146 tetratricopeptide TPR_2 repeat protein.
 
    0.793
Rcas_2921
KEGG: rrs:RoseRS_3193 hypothetical protein.
 
    0.791
Rcas_1641
PFAM: PHP domain protein; AAA-4 family protein; SMART: phosphoesterase PHP domain protein; KEGG: rrs:RoseRS_1312 AAA-4 family protein.
 
     0.782
Rcas_0362
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0120 TPR repeat-containing protein.
  
 
  0.777
Rcas_2671
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: rrs:RoseRS_3053 N-acetylmuramoyl-L-alanine amidase, family 2.
  
     0.771
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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