STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_2054PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_3553 protein of unknown function DUF820. (203 aa)    
Predicted Functional Partners:
Rcas_2481
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_0685 protein of unknown function DUF820.
  
     0.775
Rcas_4145
KEGG: pth:PTH_2559 uncharacterized protein conserved in cyanobacteria.
  
     0.688
Rcas_1833
PFAM: protein of unknown function DUF820; KEGG: rrs:RoseRS_1412 protein of unknown function DUF820.
  
     0.682
Rcas_2055
PFAM: glycosyl transferase family 39; KEGG: rrs:RoseRS_1099 glycosyl transferase, family 39.
       0.634
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.610
Rcas_2056
KEGG: rrs:RoseRS_1776 hypothetical protein.
       0.478
Rcas_2057
PFAM: ribulose-phosphate 3-epimerase; KEGG: rrs:RoseRS_1777 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.478
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.