STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3219PFAM: aminotransferase class-III; KEGG: rrs:RoseRS_3926 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (442 aa)    
Predicted Functional Partners:
Rcas_0272
PFAM: aldehyde dehydrogenase; KEGG: rrs:RoseRS_0265 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
 
 0.928
Rcas_3504
PFAM: aldehyde dehydrogenase; KEGG: ana:all5022 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.928
Rcas_0117
PFAM: aminotransferase class-III; KEGG: rrs:RoseRS_4570 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.911
Rcas_2019
PFAM: aminotransferase class-III; KEGG: rrs:RoseRS_1738 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.908
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
     
 0.905
Rcas_2929
PFAM: short-chain dehydrogenase/reductase SDR; Male sterility domain; KEGG: rrs:RoseRS_3201 short-chain dehydrogenase/reductase SDR.
    
 0.903
Rcas_3220
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: RNA-processing protein HAT helix repeating-containing protein; Tetratricopeptide domain protein; KEGG: rrs:RoseRS_3925 tetratricopeptide TPR_2 repeat protein.
   
   0.750
Rcas_1461
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rrs:RoseRS_4137 arginase; Belongs to the arginase family.
 
  
 0.742
Rcas_3221
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: rrs:RoseRS_3924 response regulator receiver modulated diguanylate cyclase.
       0.741
Rcas_3218
KEGG: rrs:RoseRS_3927 hypothetical protein.
       0.658
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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