STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3514PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sus:Acid_7719 redoxin domain protein. (157 aa)    
Predicted Functional Partners:
Rcas_3515
PFAM: pyruvate carboxyltransferase; KEGG: sru:SRU_1246 3-hydroxy-3-methylglutaryl-CoA lyase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.718
leuC-3
3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
       0.610
leuD-3
3-isopropylmalate dehydratase, small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 2 subfamily.
       0.601
Rcas_3513
PFAM: protein of unknown function DUF296; KEGG: gme:Gmet_0490 protein of unknown function DUF296.
       0.543
Rcas_3518
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: acr:Acry_2696 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
       0.486
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: rrs:RoseRS_2424 methionine-R-sulfoxide reductase.
  
  
 0.475
Rcas_3519
Dihydropyrimidinase; PFAM: amidohydrolase; KEGG: ana:alr5010 D-hydantoinase.
       0.450
Rcas_1760
Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.449
Rcas_3511
KEGG: sth:STH1729 hypothetical protein.
       0.435
Rcas_3512
Hypothetical protein.
       0.435
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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