STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_3819KEGG: rrs:RoseRS_1889 protein of unknown function DUF58. (296 aa)    
Predicted Functional Partners:
Rcas_3820
TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_1890 hypothetical protein.
 
  
 0.952
Rcas_3821
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_1891 von Willebrand factor, type A.
 
     0.942
Rcas_3818
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: rrs:RoseRS_1888 ATPase associated with various cellular activities, AAA_3.
 
  
 0.900
Rcas_3816
KEGG: rrs:RoseRS_1886 hypothetical protein.
 
     0.876
Rcas_1972
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2704 von Willebrand factor, type A.
 
  
 0.816
Rcas_1973
TIGRFAM: conserved hypothetical membrane protein; PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_2703 hypothetical protein.
 
  
 0.795
Rcas_1363
PFAM: von Willebrand factor type A; KEGG: rrs:RoseRS_3544 von Willebrand factor, type A.
 
     0.785
Rcas_0864
KEGG: rrs:RoseRS_0322 hypothetical protein.
 
     0.782
Rcas_3060
KEGG: rrs:RoseRS_2418 hypothetical protein.
 
     0.762
Rcas_3059
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_2419 ABC transporter related.
 
     0.686
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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