STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_4111PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rrs:RoseRS_3299 FAD dependent oxidoreductase. (556 aa)    
Predicted Functional Partners:
Rcas_4112
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rrs:RoseRS_3300 glycerol-3-phosphate dehydrogenase.
 0.999
Rcas_4113
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: rrs:RoseRS_3301 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
 
 0.996
Rcas_4110
TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: rrs:RoseRS_3298 dihydroxyacetone kinase, L subunit.
    
 0.954
Rcas_4114
PFAM: PTS system fructose subfamily IIA component; KEGG: rrs:RoseRS_3302 PTS system fructose subfamily IIA component.
 
  
 0.938
Rcas_1386
PFAM: 3-dehydroquinate synthase; KEGG: rrs:RoseRS_4112 3-dehydroquinate synthase.
 
  
 0.937
Rcas_2043
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: rrs:RoseRS_1765 MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 0.930
plsY
Protein of unknown function DUF205; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
    
 0.921
Rcas_4109
KEGG: rrs:RoseRS_3297 dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.
    
 0.921
Rcas_2044
KEGG: rrs:RoseRS_1766 dihydroxyacetone kinase, DhaK subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.
    
 0.843
Rcas_2045
TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: rrs:RoseRS_1767 dihydroxyacetone kinase, L subunit.
    
 0.843
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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