Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rcas_4123 | Rcas_4124 | Rcas_4123 | Rcas_4124 | TIGRFAM: thiW protein; PFAM: ThiW family protein; KEGG: rrs:RoseRS_1925 ThiW protein. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1924 ABC transporter related. | 0.809 |
Rcas_4123 | thiE | Rcas_4123 | Rcas_4121 | TIGRFAM: thiW protein; PFAM: ThiW family protein; KEGG: rrs:RoseRS_1925 ThiW protein. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.576 |
Rcas_4123 | thiM | Rcas_4123 | Rcas_4122 | TIGRFAM: thiW protein; PFAM: ThiW family protein; KEGG: rrs:RoseRS_1925 ThiW protein. | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | 0.753 |
Rcas_4124 | Rcas_4123 | Rcas_4124 | Rcas_4123 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1924 ABC transporter related. | TIGRFAM: thiW protein; PFAM: ThiW family protein; KEGG: rrs:RoseRS_1925 ThiW protein. | 0.809 |
Rcas_4124 | thiE | Rcas_4124 | Rcas_4121 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1924 ABC transporter related. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.405 |
Rcas_4124 | thiM | Rcas_4124 | Rcas_4122 | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1924 ABC transporter related. | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | 0.428 |
thiE | Rcas_4123 | Rcas_4121 | Rcas_4123 | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | TIGRFAM: thiW protein; PFAM: ThiW family protein; KEGG: rrs:RoseRS_1925 ThiW protein. | 0.576 |
thiE | Rcas_4124 | Rcas_4121 | Rcas_4124 | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1924 ABC transporter related. | 0.405 |
thiE | thiM | Rcas_4121 | Rcas_4122 | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | 0.999 |
thiM | Rcas_4123 | Rcas_4122 | Rcas_4123 | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | TIGRFAM: thiW protein; PFAM: ThiW family protein; KEGG: rrs:RoseRS_1925 ThiW protein. | 0.753 |
thiM | Rcas_4124 | Rcas_4122 | Rcas_4124 | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_1924 ABC transporter related. | 0.428 |
thiM | thiE | Rcas_4122 | Rcas_4121 | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.999 |