STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rcas_4210PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rrs:RoseRS_0032 stage II sporulation E family protein. (361 aa)    
Predicted Functional Partners:
Rcas_1195
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; ATP-binding region ATPase domain protein; KEGG: rrs:RoseRS_2161 anti-sigma-factor antagonist.
 
 0.981
Rcas_4212
PFAM: ATP-binding region ATPase domain protein; KEGG: rrs:RoseRS_0030 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.899
Rcas_1117
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_3767 anti-sigma-factor antagonist.
 
   0.864
Rcas_1194
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_2160 anti-sigma-factor antagonist.
 
   0.863
Rcas_4209
MCP methyltransferase, CheR-type with Tpr repeats; KEGG: rrs:RoseRS_0033 protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase CheR-type; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
    0.858
Rcas_4100
PFAM: ATP-binding region ATPase domain protein; KEGG: rrs:RoseRS_3290 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.843
Rcas_4098
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_3288 anti-sigma-factor antagonist.
 
   0.754
Rcas_4099
KEGG: rrs:RoseRS_3289 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.733
Rcas_4213
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: rrs:RoseRS_0029 anti-sigma-factor antagonist.
  
   0.681
Rcas_4211
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rrs:RoseRS_0031 TPR repeat-containing protein.
 
    0.665
Your Current Organism:
Roseiflexus castenholzii
NCBI taxonomy Id: 383372
Other names: R. castenholzii DSM 13941, Roseiflexus castenholzii DSM 13941, Roseiflexus castenholzii HLO8, Roseiflexus castenholzii str. DSM 13941, Roseiflexus castenholzii strain DSM 13941
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