STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pisl_1005PFAM: AMMECR1 domain protein; KEGG: pai:PAE0745 hypothetical protein. (221 aa)    
Predicted Functional Partners:
Pisl_1105
PFAM: protein of unknown function DUF52; KEGG: pai:PAE0818 conserved hypothetical protein; Belongs to the MEMO1 family.
    0.983
Pisl_0542
PFAM: Radical SAM domain protein; KEGG: pai:PAE3184 pyruvate formate-lyase activating enzyme homolog.
 
     0.748
Pisl_0022
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pai:PAE3672 pyruvate formate-lyase activating enzyme homolog.
 
     0.725
Pisl_1004
KEGG: pai:PAE0744 hypothetical protein.
       0.594
Pisl_1903
PFAM: Radical SAM domain protein; KEGG: pai:PAE2451 pyruvate formate-lyase activating enzyme homolog.
 
     0.553
Your Current Organism:
Pyrobaculum islandicum
NCBI taxonomy Id: 384616
Other names: P. islandicum DSM 4184, Pyrobaculum islandicum DSM 4184, Pyrobaculum islandicum str. DSM 4184, Pyrobaculum islandicum strain DSM 4184
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.