node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Pisl_0439 | Pisl_0573 | Pisl_0439 | Pisl_0573 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | 0.914 |
Pisl_0439 | Pisl_0703 | Pisl_0439 | Pisl_0703 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | DNA-directed RNA polymerase, subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.940 |
Pisl_0439 | rpoD | Pisl_0439 | Pisl_0697 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. | 0.943 |
Pisl_0439 | rpoH | Pisl_0439 | Pisl_0704 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | DNA-directed RNA polymerase, subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.947 |
Pisl_0439 | rpoK | Pisl_0439 | Pisl_0502 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | DNA-directed RNA polymerase, subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.948 |
Pisl_0439 | rpoN | Pisl_0439 | Pisl_0693 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | DNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. | 0.955 |
Pisl_0439 | rpoP | Pisl_0439 | Pisl_0899 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | DNA-directed RNA polymerase, subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.946 |
Pisl_0439 | tbp | Pisl_0439 | Pisl_0807 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.945 |
Pisl_0439 | tfb | Pisl_0439 | Pisl_1667 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | Transcription initiation factor IIB (TFIIB); Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). | 0.895 |
Pisl_0439 | tfe | Pisl_0439 | Pisl_1074 | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | Transcription factor IIE (TFIIE), alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elo [...] | 0.930 |
Pisl_0573 | Pisl_0439 | Pisl_0573 | Pisl_0439 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: pai:PAE3040 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. | 0.914 |
Pisl_0573 | Pisl_0703 | Pisl_0573 | Pisl_0703 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | DNA-directed RNA polymerase, subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.927 |
Pisl_0573 | rpoD | Pisl_0573 | Pisl_0697 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | DNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. | 0.948 |
Pisl_0573 | rpoH | Pisl_0573 | Pisl_0704 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | DNA-directed RNA polymerase, subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. | 0.929 |
Pisl_0573 | rpoK | Pisl_0573 | Pisl_0502 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | DNA-directed RNA polymerase, subunit K; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit family. | 0.927 |
Pisl_0573 | rpoN | Pisl_0573 | Pisl_0693 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | DNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. | 0.936 |
Pisl_0573 | rpoP | Pisl_0573 | Pisl_0899 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | DNA-directed RNA polymerase, subunit P; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoP/eukaryotic RPC10 RNA polymerase subunit family. | 0.930 |
Pisl_0573 | tbp | Pisl_0573 | Pisl_0807 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. | 0.956 |
Pisl_0573 | tfb | Pisl_0573 | Pisl_1667 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | Transcription initiation factor IIB (TFIIB); Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). | 0.916 |
Pisl_0573 | tfe | Pisl_0573 | Pisl_1074 | PFAM: Zinc finger, TFIIB-type domain protein; Transcription factor TFIIB, cyclin-related; SMART: Cyclin; KEGG: pai:PAE3329 transcription initiation factor IIB (TFIIB). | Transcription factor IIE (TFIIE), alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elo [...] | 0.929 |