STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl22Large subunit ribosomal protein l22; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (198 aa)    
Predicted Functional Partners:
rps10
Small subunit ribosomal protein s10; Involved in the binding of tRNA to the ribosomes
  
 0.999
rpl34e
Large subunit ribosomal protein l34e; Belongs to the eukaryotic ribosomal protein eL34 family
  
 0.999
rps27e
Small subunit ribosomal protein s27e; PFAM: Ribosomal protein S27E; KEGG: pai:PAE3033 ribosomal protein S27
  
 
 0.999
rpl44e
Large subunit ribosomal protein l44e; Binds to the 23S rRNA
   
 0.999
rps19e
Small subunit ribosomal protein s19e; May be involved in maturation of the 30S ribosomal subunit
 
 
 0.999
rpl39e
Large subunit ribosomal protein l39e; Belongs to the eukaryotic ribosomal protein eL39 family
    
   0.999
rpl31e
Large subunit ribosomal protein l31e; Belongs to the eukaryotic ribosomal protein eL31 family
  
 0.999
rpl18a
Large subunit ribosomal protein lx; PFAM: Ribosomal LX protein; KEGG: pai:PAE3098 ribosomal protein LX
   
 0.999
rpl11
Large subunit ribosomal protein l11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
  
 0.999
rpl1
Large subunit ribosomal protein l1; Binds directly to 23S rRNA. Probably involved in E site tRNA release
 
 0.999
Your Current Organism:
Pyrobaculum islandicum
NCBI taxonomy Id: 384616
Other names: P. islandicum DSM 4184, Pyrobaculum islandicum DSM 4184, Pyrobaculum islandicum DSM4184, Pyrobaculum islandicum str. DSM 4184, Pyrobaculum islandicum strain DSM 4184
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