STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
algLAlginate lyase AlgL; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space. (367 aa)    
Predicted Functional Partners:
algG
alginate-C5-mannuronan-epimerase AlgG; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.998
algX
Alginate biosynthesis protein AlgX; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
  
 0.985
algK
Alginate biosynthesis precursor AlgK; Function of homologous gene experimentally demonstrated in an other organism; phenotype.
 
  
 0.978
alg8
Glycosyl transferase Alg8; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.970
algJ
Alginate O-acetylation protein AlgJ precursor; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.941
PSEEN3462
Putative alginate lyase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
  
 
0.925
PSEEN3463
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.920
algE
Outer membrane protein AlgE; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.919
alg44
Alginate biosynthesis protein Alg44; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.911
PSEEN3459
Putative alginate O-acetylation protein AlgJ-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
  
 0.875
Your Current Organism:
Pseudomonas entomophila
NCBI taxonomy Id: 384676
Other names: P. entomophila L48, Pseudomonas entomophila L48, Pseudomonas entomophila str. L48, Pseudomonas entomophila strain L48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.