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GLYMA03G41400.1 protein (Glycine max) - STRING interaction network
"GLYMA03G41400.1" - Uncharacterized protein in Glycine max
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLYMA03G41400.1Uncharacterized protein (241 aa)    
Predicted Functional Partners:
GLYMA01G38120.1
Uncharacterized protein (481 aa)
     
 
  0.994
GLYMA08G15260.1
Uncharacterized protein (131 aa)
     
 
  0.985
GLYMA05G31950.1
Uncharacterized protein (131 aa)
     
 
  0.985
GLYMA10G02680.2
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (206 aa)
     
 
  0.974
GLYMA02G17120.3
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (206 aa)
     
 
  0.974
GLYMA20G18440.4
Uncharacterized protein (287 aa)
     
 
  0.970
GLYMA10G24350.4
Uncharacterized protein (276 aa)
     
 
  0.970
GLYMA15G00840.1
Uncharacterized protein (349 aa)
     
 
  0.964
GLYMA13G44430.1
Uncharacterized protein (350 aa)
     
 
  0.964
GLYMA15G08941.1
Uncharacterized protein (1057 aa)
     
 
  0.953
Your Current Organism:
Glycine max
NCBI taxonomy Id: 3847
Other names: G. max, Glycine max, Glycine max (L.) Merr., soybean, soybeans
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