I1JJR9_SOYBN protein (Glycine max) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I1JJR9_SOYBN

Uncharacterized protein. (114 aa)

Predicted Functional Partners:

rps14

0.807

rpl16

0.779

K7LAX9_SOYBN

0.762

I1JIN3_SOYBN

0.757

I1KG35_SOYBN

0.757

K7KRK2_SOYBN

0.757

rps4

0.757

rps3

0.757

I1KBB2_SOYBN

0.748

K7KLL7_SOYBN

0.748

Your Current Organism:

Glycine max

NCBI taxonomy Id: 3847
Other names: G. max, Glycine max (L.) Merr., soybean, soybeans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1JIN3_SOYBN	I1JJR9_SOYBN	I1JIN3	I1JJR9	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Uncharacterized protein.	0.757
I1JIN3_SOYBN	I1KG35_SOYBN	I1JIN3	I1KG35	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Ribosomal_S10 domain-containing protein.	0.668
I1JIN3_SOYBN	K7KRK2_SOYBN	I1JIN3	K7KRK2	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.955
I1JIN3_SOYBN	K7LAX9_SOYBN	I1JIN3	K7LAX9	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Ribosomal_L2 domain-containing protein.	0.964
I1JIN3_SOYBN	rpl16	I1JIN3	M1FN38	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.965
I1JIN3_SOYBN	rps14	I1JIN3	M1FQJ9	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Ribosomal protein subunit S14.	0.986
I1JIN3_SOYBN	rps3	I1JIN3	M1FIU0	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.884
I1JIN3_SOYBN	rps4	I1JIN3	M1FIS9	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	Ribosomal protein S4.	0.884
I1JJR9_SOYBN	I1JIN3_SOYBN	I1JJR9	I1JIN3	Uncharacterized protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.757
I1JJR9_SOYBN	I1KBB2_SOYBN	I1JJR9	I1KBB2	Uncharacterized protein.	Uncharacterized protein.	0.748
I1JJR9_SOYBN	I1KG35_SOYBN	I1JJR9	I1KG35	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.757
I1JJR9_SOYBN	K7KLL7_SOYBN	I1JJR9	K7KLL7	Uncharacterized protein.	B30.2/SPRY domain-containing protein.	0.748
I1JJR9_SOYBN	K7KRK2_SOYBN	I1JJR9	K7KRK2	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.	0.757
I1JJR9_SOYBN	K7LAX9_SOYBN	I1JJR9	K7LAX9	Uncharacterized protein.	Ribosomal_L2 domain-containing protein.	0.762
I1JJR9_SOYBN	rpl16	I1JJR9	M1FN38	Uncharacterized protein.	Ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.779
I1JJR9_SOYBN	rps14	I1JJR9	M1FQJ9	Uncharacterized protein.	Ribosomal protein subunit S14.	0.807
I1JJR9_SOYBN	rps3	I1JJR9	M1FIU0	Uncharacterized protein.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.757
I1JJR9_SOYBN	rps4	I1JJR9	M1FIS9	Uncharacterized protein.	Ribosomal protein S4.	0.757
I1KBB2_SOYBN	I1JJR9_SOYBN	I1KBB2	I1JJR9	Uncharacterized protein.	Uncharacterized protein.	0.748
I1KG35_SOYBN	I1JIN3_SOYBN	I1KG35	I1JIN3	Ribosomal_S10 domain-containing protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.668