STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copACopper-translocating P-type ATPase. (737 aa)    
Predicted Functional Partners:
lwe1871
Heavy metal transport/detoxification protein.
 
 
 0.986
lwe1873
Conserved hypothetical protein.
 
  
 0.847
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.586
lwe2441
Transcriptional regulator, ArsR family.
  
  
 0.572
ctpA
Carboxy-terminal processing protease; Belongs to the peptidase S41A family.
     
 0.537
lwe2082
Copper resistance domain protein.
     
 0.527
lwe1874
D-alanyl-D-alanine carboxypeptidase family protein.
       0.500
czcD
Cation efflux family protein.
  
  
 0.451
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
 
    
 0.437
lwe0088
Transcriptional regulator, ArsR family.
  
  
 0.432
Your Current Organism:
Listeria welshimeri
NCBI taxonomy Id: 386043
Other names: L. welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b str. SLCC5334, Listeria welshimeri serovar 6b strain SLCC5334
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.