Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aroA | cmk | lwe1949 | lwe1965 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Cytidylate kinase. | 0.933 |
aroA | ndk | lwe1949 | lwe1955 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.596 |
cmk | aroA | lwe1965 | lwe1949 | Cytidylate kinase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.933 |
cmk | comEB | lwe1965 | lwe1496 | Cytidylate kinase. | Zinc-binding, ComEB family competence protein. | 0.904 |
cmk | der | lwe1965 | lwe1963 | Cytidylate kinase. | GTPase family protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.984 |
cmk | lwe0112 | lwe1965 | lwe0112 | Cytidylate kinase. | Putative 5'-nucleotidase, peptidoglycan bound protein (LPXTG motif). | 0.900 |
cmk | lwe1964 | lwe1965 | lwe1964 | Cytidylate kinase. | 30S ribosomal protein S1. | 0.957 |
cmk | ndk | lwe1965 | lwe1955 | Cytidylate kinase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.937 |
cmk | nrdA | lwe1965 | lwe2172 | Cytidylate kinase. | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. | 0.924 |
cmk | nrdB | lwe1965 | lwe2171 | Cytidylate kinase. | Ribonucleoside-diphosphate reductase beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. | 0.934 |
cmk | panC | lwe1965 | lwe1920 | Cytidylate kinase. | Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. | 0.916 |
cmk | udk | lwe1965 | lwe1510 | Cytidylate kinase. | Uridine kinase. | 0.928 |
comEB | cmk | lwe1496 | lwe1965 | Zinc-binding, ComEB family competence protein. | Cytidylate kinase. | 0.904 |
comEB | lwe0112 | lwe1496 | lwe0112 | Zinc-binding, ComEB family competence protein. | Putative 5'-nucleotidase, peptidoglycan bound protein (LPXTG motif). | 0.906 |
der | cmk | lwe1963 | lwe1965 | GTPase family protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Cytidylate kinase. | 0.984 |
der | lwe1964 | lwe1963 | lwe1964 | GTPase family protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 30S ribosomal protein S1. | 0.619 |
lwe0112 | cmk | lwe0112 | lwe1965 | Putative 5'-nucleotidase, peptidoglycan bound protein (LPXTG motif). | Cytidylate kinase. | 0.900 |
lwe0112 | comEB | lwe0112 | lwe1496 | Putative 5'-nucleotidase, peptidoglycan bound protein (LPXTG motif). | Zinc-binding, ComEB family competence protein. | 0.906 |
lwe0112 | udk | lwe0112 | lwe1510 | Putative 5'-nucleotidase, peptidoglycan bound protein (LPXTG motif). | Uridine kinase. | 0.925 |
lwe1964 | cmk | lwe1964 | lwe1965 | 30S ribosomal protein S1. | Cytidylate kinase. | 0.957 |
page 1 of 2