Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aroA | cmk | lwe1949 | lwe1965 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate | annotation not available | 0.957 |
| aroA | lwe1964 | lwe1949 | lwe1964 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate | annotation not available | 0.434 |
| aroA | ndk | lwe1949 | lwe1955 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate | 0.626 |
| cmk | aroA | lwe1965 | lwe1949 | annotation not available | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate | 0.957 |
| cmk | comEB | lwe1965 | lwe1496 | annotation not available | annotation not available | 0.907 |
| cmk | der | lwe1965 | lwe1963 | annotation not available | Gtpase family protein; GTPase that plays an essential role in the late steps of ribosome biogenesis | 0.918 |
| cmk | lwe1964 | lwe1965 | lwe1964 | annotation not available | annotation not available | 0.978 |
| cmk | ndk | lwe1965 | lwe1955 | annotation not available | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate | 0.944 |
| cmk | nrdA | lwe1965 | lwe2172 | annotation not available | Ribonucleoside-diphosphate reductase alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides | 0.924 |
| cmk | nrdB | lwe1965 | lwe2171 | annotation not available | Ribonucleoside-diphosphate reductase beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides | 0.939 |
| cmk | pyrR | lwe1965 | lwe1859 | annotation not available | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Regulates transcriptional attenuation of the pyrimidine nucleotide (pyr) operon by binding in a uridine-dependent manner to specific sites on pyr mRNA. This disrupts an antiterminator hairpin in the RNA and favors formation of a downstream transcription terminator, leading to a reduced expression of downstream genes | 0.951 |
| cmk | udk | lwe1965 | lwe1510 | annotation not available | annotation not available | 0.966 |
| cmk | upp | lwe1965 | lwe2487 | annotation not available | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate | 0.956 |
| comEB | cmk | lwe1496 | lwe1965 | annotation not available | annotation not available | 0.907 |
| der | cmk | lwe1963 | lwe1965 | Gtpase family protein; GTPase that plays an essential role in the late steps of ribosome biogenesis | annotation not available | 0.918 |
| der | lwe1964 | lwe1963 | lwe1964 | Gtpase family protein; GTPase that plays an essential role in the late steps of ribosome biogenesis | annotation not available | 0.708 |
| lwe1964 | aroA | lwe1964 | lwe1949 | annotation not available | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate | 0.434 |
| lwe1964 | cmk | lwe1964 | lwe1965 | annotation not available | annotation not available | 0.978 |
| lwe1964 | der | lwe1964 | lwe1963 | annotation not available | Gtpase family protein; GTPase that plays an essential role in the late steps of ribosome biogenesis | 0.708 |
| ndk | aroA | lwe1955 | lwe1949 | Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate | 0.626 |
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