STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB5BRas-related protein Rab-5B. (309 aa)    
Predicted Functional Partners:
RABGEF1
Rab5 GDP/GTP exchange factor isoform X1.
   
 0.969
PIK3C3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.963
RIN1
Ras and Rab interactor 1 isoform X1.
    
 0.930
RAB5A
Ras-related protein Rab-5A.
  
  
 
0.902
RAB5C
Ras-related protein Rab-5C.
  
  
 
0.902
APPL2
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.
   
 
 0.902
APPL1
DCC-interacting protein 13 alpha.
   
 
 0.900
EEA1
LOW QUALITY PROTEIN: early endosome antigen 1.
    
 0.855
RBSN
Rabenosyn-5.
   
 0.828
GAK
LOW QUALITY PROTEIN: cyclin-G-associated kinase.
   
 0.782
Your Current Organism:
Phascolarctos cinereus
NCBI taxonomy Id: 38626
Other names: P. cinereus, koala
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.