STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK62380.1Probable arylsulfatase regulator; Involved in 'Cys-type' sulfatase maturation under anaerobic conditions. Catalyzes the post-translational modification of cysteine into 3-oxoalanine (also known as C(alpha)-formylglycine (FGly)), by a free radical chemical mechanism initiated via the reductive cleavage of S-adenosyl-L-methionine (SAM) (By similarity). (374 aa)    
Predicted Functional Partners:
ABK60382.1
Probable sulfatase; Identified by match to protein family HMM PF00884.
 
   0.970
ABK62382.1
N-acetylgalactosamine 6-sulfate sulfatase; Identified by match to protein family HMM PF00884.
 
   0.903
ABK61330.1
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 
 0.865
ABK61939.1
Conserved hypothetical protein.
       0.691
ABK60952.1
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; match to protein family HMM PF07702.
       0.429
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.
 
     0.426
ABK62218.1
Identified by match to protein family HMM PF00884.
  
   0.410
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.