Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK60597.1 | ABK61035.1 | NT01CX_2261 | NT01CX_1037 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | 0.856 |
| ABK60597.1 | ABK61150.1 | NT01CX_2261 | NT01CX_2253 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.807 |
| ABK60597.1 | ABK61161.1 | NT01CX_2261 | NT01CX_1989 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.861 |
| ABK60597.1 | ABK61238.1 | NT01CX_2261 | NT01CX_2262 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.818 |
| ABK60597.1 | ABK61443.1 | NT01CX_2261 | NT01CX_2263 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sporulation factor SpoIIGA; Identified by match to protein family HMM PF03419. | 0.892 |
| ABK60597.1 | ABK61524.1 | NT01CX_2261 | NT01CX_1969 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage III sporulation protein AA, SpoIIIAA. | 0.759 |
| ABK60597.1 | ABK62261.1 | NT01CX_2261 | NT01CX_0063 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein P; Identified by match to protein family HMM PF07454. | 0.766 |
| ABK60597.1 | ABK62525.1 | NT01CX_2261 | NT01CX_0561 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein R. | 0.801 |
| ABK60597.1 | spoIIAB | NT01CX_2261 | NT01CX_1805 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.857 |
| ABK60597.1 | spoIIID | NT01CX_2261 | NT01CX_0524 | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage III sporulation protein D. | 0.802 |
| ABK61035.1 | ABK60597.1 | NT01CX_1037 | NT01CX_2261 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Specialized DNA-dependent RNA polymerase sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.856 |
| ABK61035.1 | ABK61150.1 | NT01CX_1037 | NT01CX_2253 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.817 |
| ABK61035.1 | ABK61161.1 | NT01CX_1037 | NT01CX_1989 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. | 0.850 |
| ABK61035.1 | ABK61238.1 | NT01CX_1037 | NT01CX_2262 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.860 |
| ABK61035.1 | ABK61443.1 | NT01CX_1037 | NT01CX_2263 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Sporulation factor SpoIIGA; Identified by match to protein family HMM PF03419. | 0.955 |
| ABK61035.1 | ABK61524.1 | NT01CX_1037 | NT01CX_1969 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Stage III sporulation protein AA, SpoIIIAA. | 0.817 |
| ABK61035.1 | ABK62261.1 | NT01CX_1037 | NT01CX_0063 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Stage II sporulation protein P; Identified by match to protein family HMM PF07454. | 0.904 |
| ABK61035.1 | ABK62525.1 | NT01CX_1037 | NT01CX_0561 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Stage II sporulation protein R. | 0.890 |
| ABK61035.1 | spoIIAB | NT01CX_1037 | NT01CX_1805 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.900 |
| ABK61035.1 | spoIIID | NT01CX_1037 | NT01CX_0524 | Stage II sporulation protein E; Identified by match to protein family HMM PF07228. | Stage III sporulation protein D. | 0.852 |
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