STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine ABC transporter ATP-binding subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (347 aa)    
Predicted Functional Partners:
potB
ABC-type spermidine/putrescine transport system, permease protein 1; Identified by match to protein family HMM PF00528.
 
 0.999
potC
Spermidine/putrescine ABC transporter, permease protein 2; Identified by match to protein family HMM PF00528.
 
 0.998
ABK61032.1
Bacterial extracellular solute-binding protein, putative; Identified by match to protein family HMM PF01547.
 
 
 0.998
ABK60942.1
Probable ABC transporter; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
   
0.872
ABK62157.1
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
 
  
 0.818
ABK61223.1
Probable glycine betaine/carnitine/choline ABC transporter; Identified by match to protein family HMM PF00528; match to protein family HMM PF04069.
 
 
 0.644
ABK62020.1
ABC transporter, permease; Identified by match to protein family HMM PF02687.
 
 
    0.557
hisF
Imidazole glycerol phosphate synthase subunit HisF; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP; Belongs to the PRA-CH family.
  
  
 0.525
ABK62422.1
Bifunctional folate synthesis protein; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.521
ABK61842.1
Amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
 0.490
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.