STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potASpermidine/putrescine transport system atp-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system (347 aa)    
Predicted Functional Partners:
potB
ABC-type spermidine/putrescine transport system, permease protein 1; Identified by match to protein family HMM PF00528
 0.998
potC
Spermidine/putrescine ABC transporter, permease protein 2; Identified by match to protein family HMM PF00528
 
 0.997
ABK61032.1
Spermidine/putrescine transport system substrate-binding protein; Bacterial extracellular solute-binding protein, putative; Identified by match to protein family HMM PF01547
 0.997
ABK62157.1
DNA-binding protein, putative; Identified by match to protein family HMM PF01381
 
     0.855
ABK62401.1
Glucose pts system eiicba or eiicb component; PTS enzyme II, ABC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830
   
 
 0.736
ABK61287.1
Glucose pts system eiicba or eiicb component; PTS enzyme II, ABC component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830
   
 
 0.736
ABK61602.1
Raffinose/stachyose/melibiose transport system permease protein; Sugar ABC transporter, permease protein, putative; Identified by match to protein family HMM PF00528
 
 
 0.539
ABK60900.1
Raffinose/stachyose/melibiose transport system permease protein; Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528
 
 
 0.506
ABK62056.1
Raffinose/stachyose/melibiose transport system substrate-binding protein; Hypothetical ABC transporter extracellular binding protein; Identified by match to protein family HMM PF01547
  
 
 0.454
ABK62422.1
Dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
       0.447
Your Current Organism:
Clostridium novyi NT
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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