STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK61376.1Uncharacterised P-loop ATPase protein family; Displays ATPase and GTPase activities. (294 aa)    
Predicted Functional Partners:
ABK61550.1
Hypothetical UPF0052 protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
  
 0.963
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
 
  
 0.922
ABK60577.1
CBS domain containing protein; Similar to B. subtilis ytoI; identified by match to protein family HMM PF00571; match to protein family HMM PF07085.
     
 0.848
ABK62271.1
Ribonuclease G.
 
 
 
 0.771
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
     
 0.680
ABK61331.1
Phosphotransferase system mannitol/fructose-specific IIA domain; Identified by match to protein family HMM PF00359.
  
  
 0.655
ABK61581.1
Penicillin-binding protein, putative; Identified by match to protein family HMM PF00905.
 
     0.630
ABK61350.1
PHP family protein; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811.
       0.607
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.604
yfiA
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
  
 0.552
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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