STRINGSTRING
whiA protein (Clostridium novyi NT) - STRING interaction network
"whiA" - Putative sporulation transcription regulator WhiA in Clostridium novyi NT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiAPutative sporulation transcription regulator WhiA; May be required for sporulation (317 aa)    
Predicted Functional Partners:
ABK61550.1
Putative gluconeogenesis factor; Required for morphogenesis under gluconeogenic growth conditions (445 aa)
   
   
  0.955
ABK61376.1
Nucleotide-binding protein NT01CX_1284; Displays ATPase and GTPase activities (294 aa)
 
   
  0.941
ABK60577.1
CBS domain containing protein; Similar to B. subtilis ytoI; identified by match to protein family HMM PF00571; match to protein family HMM PF07085 (431 aa)
              0.899
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation (307 aa)
              0.730
uvrC
UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5’ and 3’ sides of the lesion. The N-terminal half is responsible for the 3’ incision and the C-terminal half is responsible for the 5’ incision (621 aa)
              0.657
ABK61350.1
Probable phosphatase NT01CX_1282; Identified by match to protein family HMM PF02231; match to protein family HMM PF02811 (244 aa)
              0.627
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (878 aa)
   
   
  0.544
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity (394 aa)
         
  0.537
ABK62154.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA (443 aa)
 
   
  0.519
ABK61777.1
2,4-dienoyl-CoA reductase, putative; Identified by match to protein family HMM PF00070; match to protein family HMM PF00724 (667 aa)
         
  0.516
Your Current Organism:
Clostridium novyi NT
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
Server load: low (10%) [HD]