STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK60809.1htrA-like serine protease (with PDZ domain); Identified by match to protein family HMM PF00089; match to protein family HMM PF00595. (378 aa)    
Predicted Functional Partners:
ABK61795.1
Ribonuclease BN, putative; Identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; Belongs to the UPF0761 family.
       0.563
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.548
glpK-2
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.548
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.514
ABK60748.1
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
    
  0.511
ABK62010.1
Identified by match to protein family HMM PF00378; Belongs to the enoyl-CoA hydratase/isomerase family.
    
  0.477
ABK61427.1
Sensory transduction histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518.
  
  
 0.470
ABK60494.1
ATPase AAA-like protein; Identified by match to protein family HMM PF00004.
    
 0.458
ABK61334.1
Sensor histidine kinase; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
  
 0.455
ABK60586.1
Pyrophosphatase, MutT/nudix family; Identified by match to protein family HMM PF00293.
    
  0.437
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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