STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atpA-2V-type sodium ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. (591 aa)    
Predicted Functional Partners:
atpI
V-type sodium ATP synthase subunit I; Identified by match to protein family HMM PF01496; Belongs to the V-ATPase 116 kDa subunit family.
 
 0.999
atpK
V-type sodium ATP synthase subunit K; Identified by match to protein family HMM PF00137.
 
 0.999
atpE-2
ATP synthase (E/31 kDa) subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
ABK61047.1
ATP synthase (C/AC39) subunit; Identified by match to protein family HMM PF01992.
 
 0.999
atpF-2
ATP synthase (F/14-kDa) subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
atpB-2
V-type sodium ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit.
 
0.999
atpD-2
V-type ATPase, D subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
 0.999
atpE
ATP synthase F0 subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.988
ABK61884.1
Manganese-dependent inorganic pyrophosphatase; Identified by match to protein family HMM PF00571; match to protein family HMM PF02833; match to protein family HMM PF07085.
     
  0.900
ABK60625.1
V-type sodium ATP synthase subunit G.
   
 
 0.891
Your Current Organism:
Clostridium novyi
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.