Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABK62174.1 | rplD | NT01CX_1113 | NT01CX_1116 | Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144. | Ribosomal protein L4/L1 family; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.941 |
| ABK62174.1 | rplI | NT01CX_1113 | NT01CX_0889 | Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.922 |
| ABK62174.1 | rplM | NT01CX_1113 | NT01CX_1150 | Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.928 |
| ABK62174.1 | rplS | NT01CX_1113 | NT01CX_2208 | Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.923 |
| ABK62174.1 | rplU | NT01CX_1113 | NT01CX_0081 | Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.930 |
| ABK62174.1 | rpsB | NT01CX_1113 | NT01CX_2149 | Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.929 |
| ABK62174.1 | tsf | NT01CX_1113 | NT01CX_2148 | Translation elongation factor Tu; Identified by match to protein family HMM PF00009; match to protein family HMM PF03143; match to protein family HMM PF03144. | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.980 |
| frr | pyrH | NT01CX_2146 | NT01CX_2147 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.986 |
| frr | rplD | NT01CX_2146 | NT01CX_1116 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L4/L1 family; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.965 |
| frr | rplI | NT01CX_2146 | NT01CX_0889 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.954 |
| frr | rplM | NT01CX_2146 | NT01CX_1150 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.984 |
| frr | rplS | NT01CX_2146 | NT01CX_2208 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.953 |
| frr | rplU | NT01CX_2146 | NT01CX_0081 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.955 |
| frr | rpsB | NT01CX_2146 | NT01CX_2149 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.994 |
| frr | tsf | NT01CX_2146 | NT01CX_2148 | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. | 0.990 |
| pyrH | frr | NT01CX_2147 | NT01CX_2146 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.986 |
| pyrH | rplD | NT01CX_2147 | NT01CX_1116 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ribosomal protein L4/L1 family; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.412 |
| pyrH | rplI | NT01CX_2147 | NT01CX_0889 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.567 |
| pyrH | rplM | NT01CX_2147 | NT01CX_1150 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.414 |
| pyrH | rplS | NT01CX_2147 | NT01CX_2208 | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.444 |
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